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What Makes A Disease Rare

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What Makes A Disease Rare – Genetic testing can help improve the lives of people and families with rare diseases. Each rare disease may be considered “rare” on its own, but given that there are 7,000 rare diseases, they affect millions of people around the world. To raise awareness about rare diseases, we’ve put together a series of infographics to explain the basics of rare diseases and how they affect people around us.

Bhatt, Kesha. “The Importance of Rare Disease Research”. PLOS, March 11, 2020, https://scicomm.plos.org/2020/03/11/ Accessed February 3, 2022.

What Makes A Disease Rare

What Makes A Disease Rare

Nguyengang Wakap, Stéphanie et al. “Estimating Cumulative Point Distributions of Rare Diseases: Analysis of Orphan Databases”. Eur J Hum Gene 28, 165–173 (2020), https://doi.org/10.1038/s41431-019-0508-0, https://www.nature.com/articles/s41431-019-0508-0 .pdf . Reviewed February 7, 2022.

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Rare disease diagnostic panels are divided into test categories based on the organ or tissue most commonly affected by the syndrome.

The FH, PH, and RAS Kit analyzes 11, 11, and 30 genes, respectively, and includes disorders associated with familial hemophilia (FH), pulmonary hypertension (PH), and RASopathy (RAS).

What Makes A Disease Rare

AKT3, BRAF, CBL, CCND2, EPHB4, HRAS, KRAS, LZTR1, MAP2K1, MAP2K2, MRAS, NF1, NF2, NRAS, PIK3CA, PIK3R2, PPP1CB, PTPN11, RAF1, RASA1, RASA2, RAS1 SMARCB1, SOS1, SOS2, SPRED1 , STAMBP

National Organization For Rare Disorders

     • NM_001042492.3 (NF1): exon 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32 , 33, 34, 35 and 36

This test targets the entire coding screen and 12 bp flanking internal sequence of MANE and/or canonical transcripts to detect all variants associated with the genes listed above. Variants falling outside the target region are not intended to be detected by this assay. Unless otherwise stated, sequence variations (SNVs and INDELS) in promoters and other non-coding regions are excluded. Some sequence variations (SNVs and INDELS) in non-coding regions of selected genes with clinical significance were also included in the analysis. In cases where two variants are identified in a gene, the test does not distinguish between those on the same chromosome (cis) or on different chromosomes (trans). Certain genetic abnormalities such as translocations, rearrangements, polymorphisms, and epigenetic effects are excluded from this test. Certain sequence variations (SNVs and INDELS) in target regions containing repetitive content, sequences of high homology such as partial duplications and pseudogenes, as well as regions with high/low GC content cannot be detected. Copy number variations (CNVs) were calculated using high-quality, duplicated and uniquely aligned sequencing reads. CNVs were detected for a subset of target regions using a depth-of-field coverage method by normalizing GC content. Gene regions that deviate significantly from the normal coverage range estimated from a set of reference clinical samples are called variable. This test can detect CNVs down to the level of several exons. This test excluded genome-wide CNVs with low mapping ability or repeats, pseudogenes, and high/low GC content. The sensitivity and specificity of CNV detection by NGS is lower than that of organic quantification methods, so the absence of reported CNVs does not guarantee the absence of CNVs. The lack of pathogenic variants in target genes reduces but does not exclude the possibility of a disease-associated syndrome. Although the test is highly accurate, there is still the possibility of false positive or false negative results.

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The PGT Kit reduces whole chromosome aneuploidy, structural rearrangements and segmental aneuploidy up to 10Mb, and selects male polymorphisms and mosaicism above 50%.

Medicover Genetics continuously supports all technology transfer partners through dedicated customer service channels. Our team members are available anytime for troubleshooting, quality and performance monitoring, marketing and merchandising insights, and technical support. Our provided software is automatically updated to ensure seamless operation.

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The Medicover Genetics Technology Transfer platform and software easily interprets results by visualizing results in graphs and tubes instead of raw data. We also provide template reports and guidance on request to make it easier for each laboratory to prepare their own reports.

VEGA is software for bioinformatics analysis of samples processed using the NIPT IVD Kit – VERACITY and VERACITY High Content (HC) or TarCET IVD Kits. Analyze NGS data generated by VEGA NIPT or TarCET IVD workflows. NIPT analysis provides fetal segmental prediction and binary classification of 21, 18, 13, sex chromosome aneuploidies (SCAs), selected microarrays, and singletons. TarCET analysis can detect single-nucleotide variants, short insertions and/or deletions, and increase the number of mutations. In addition, VEGA can be applied to TarCET PGT to detect embryonic and structural rearrangements in embryos prepared for in vitro fertilization (IVF).

POLARIS is a genetic data management system that helps laboratory personnel manage sample data generated during VERACITY and VERACITY High Content (HC) workflows. The POLARIS Medicover Genetics analysis engine interfaces with VEGA to provide analysis run data and capture analysis data for visualization in graphical and tabular formats. POLARIS can also be integrated into local laboratory management systems.

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What Makes A Disease Rare

SIRIUS is a genomic data management web application that allows users to manage information generated by NGS analysis. In addition, the SIRIUS Medicover Genetics analysis engine facilitates the creation, calculation and conversion of sample batches compatible with sequencing runs and interfaces with VEGA, providing analysis data in visual graph and tabular formats.

Rare Diseases Clinical Trials Toolbox

Medicover Genetics’ technology transfer platform offers comprehensive testing across a range of procedures, making it a unique and efficient solution for laboratories of any size. With our technology transfer platform, laboratories can perform a wide range of genetic tests including NIPT, cardiac, hereditary cancer, carrier screening and metabolic testing. This improves turnaround times and lowers operating costs while ensuring high-quality results. Our comprehensive testing approach is ideal for laboratories looking to offer a wide range of genetic testing to their healthcare partners and patients.

Our technology submission platform’s workflow is designed to minimize the risk of error, reduce manual processing, and increase the accuracy of test results, giving patients and physicians the confidence to make the right decisions with our user-friendly protocol. Implementation of this protocol ensures that laboratory personnel operate according to standardized procedures, reducing the potential for human error and improving the quality of results.

ABCC8, ABCD1, ABCD4, ACAD8, ACAD9, ACADM, ACADS, ACADSB, ACADVL, ACOX1, ACSF3, AGA, AGL, AGPS, ALDH6A1, ALDOA, ALDOB, ALG1, ALG11, ALG12, ALG3, ALG3 ALG9, AMACR, AMT, ARG1 , ARSA, ARSB, ASL, ASPA, ASS1, AUH, B4GALT1, BCKDHA, BCKDHB, BTD, CAD, CCDC115, CD320, CLN3, CLN5, CLN6, CLN8, CLPB, COG1, COG2 COG5, COG6, COG7, COG8, CPS1, CPT1A, CPT2, CTNS, CTSA, CTSK, DBT, DDOST, DHCR7, DHDDS, DLD, DNAJC12, DNAJC19, DOLK, DPAGT1, DPM1, DPM2, DPM3, ENO3 ETFDH, FBP1, FUCA1, FUT8, G6PC, GAA, GALC, GALNS , GAMT, GATM, GBA, GBE1, GCDH, GCH1, GCK, GCSH, GLA, GLB1, GLDC, GLUD1, GM2A, GMPPB, GNPTAB GNS, GUSB, GYG1, GYS1, GYS2, HADH, HADHA, HADHB, HCFC1, HEXA, HEXB, HGSNAT, HMGCL, HMGCS2, HPD, HRAS, HSD17B10, HSD17B4, HYAL1, IDS, IDUAMC, INSR LIAS, LIPA, LMBRD1, MAN1B1, MAN2B1, MANBA, MCEE, MCOLN1, MFSD8, MGAT2, MLYCD, MMAA, MMAB, MMACHC , MMADHC, MMUT, MOGS, MPDU1, MPI, MTR, MTRR, NAGA, NAGLU NGLY1, NPC1, NPC2, NUS1, OPA3, OTC, PAH, PCBD1, PEX1, PEX10, PEX11B, PEX12, PEX13, PEX14, PEX16, PEX19, PEX2, PEX26, PEX3, PEX5, PEX6, PEX7, PFKM, PGAM2 PHKA1, PHKA2, PHKB, PHKG2, PHYH, PMM2, PPM1K, PPT1, PRKAG2, PSAP, PTS, PYGL, PYGM, QDPR, RFT1, SCP2, SERAC1, SGSH , SLC16A1, SLC17A5, SLC25A13, SLC25A13 SLC35A1, SLC35A2, SLC35C1, SLC37A4, SLC39A8, SLC6A8, SLC6A9, SMPD1, SRD5A3, SSR4, STT3A, STT3B, SUCLA2, SUCLG1, SUMF1, TAFAZZIN, TIMM50, TMEM16

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ACTA2, ACTC1, ACVR2B, AFF4, BMPR2, CAD, CFAP53, CDK13, CELSR1, CELSR2, CELSR3, CHD4, CHD7, CITED2, CREBBP, CRELD1, DNAH11, DNAH5, DNAH6, DNAI1, EVT FBN1, FLNA, FOXC1, FOXH1, GANAB , GATA4, GATA5, GATA6, GDF1, GPC3, HAND1, HAND2, HRAS, JAG1, KDM5B, KMT2D, MED13L, MMP21, MYH11, MYH6, MYH6, MYH6 6. NME7 TGFBR2, TLL1, TMEM260, TPM1, ZEB2, ZFPM2, ZIC3

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ABCC6, ACTA2, ACVR1, ADAMTS2, ALDH18A1, ATP6V0A2, ATP6V1A, ATP6V1E1, B3GALT6, B4GALT7, BGN, C1R, C1S, CBS, CHST14, COL1A2, COL1A2 2, ELN, FBLN5, FBN1, FBN2, FKBP14, FOXE3, GORAB, LOX , LTBP4, MFAP5, MYH11, MYLK, PLOD1, PRDM5, PYCR1, SKI, SLC2A10, SLC39A13, SMAD3, SMAD4, TGFB2, TGFB3, TGFB2

ABCC9, AKAP9, ANK2, CACNA1C, CACNA2D1, CACNB2, CALM1, CALM2,

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